PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_73811B853.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 150aa    MW: 16432.8 Da    PI: 6.4982
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_73811B853.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.78.7e-271474259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                           +Dg +WrKYGqK++ g+++pr+Y+rCt++   gC+++k+v+r+a dp +++++Y+g H++ 
  Traes_1BL_73811B853.1 14 NDGLSWRKYGQKDILGAPYPRAYFRCTHRhtqGCQATKQVQRAAADPLLFDVIYHGAHTCA 74
                           8***************************98999**************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-28275IPR003657WRKY domain
SuperFamilySSF1182903.4E-25674IPR003657WRKY domain
PROSITE profilePS5081121.93871IPR003657WRKY domain
SMARTSM007741.1E-381375IPR003657WRKY domain
PfamPF031061.2E-251473IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
QVRVASVTDA GPLNDGLSWR KYGQKDILGA PYPRAYFRCT HRHTQGCQAT KQVQRAAADP  60
LLFDVIYHGA HTCAQAAAQQ QSPAGFEQEQ ESPPAXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXG YAAGGGLGAD MGFGGQLDEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-15472873Probable WRKY transcription factor 4
2lex_A1e-15472873Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF3683626e-92EF368362.1 Triticum aestivum WRKY transcription factor (WRKY19-a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458250.13e-41hypothetical protein SORBIDRAFT_03g029920
SwissprotQ9SUP62e-28WRK53_ARATH; Probable WRKY transcription factor 53
TrEMBLW5A3166e-75W5A316_WHEAT; Uncharacterized protein
STRINGMLOC_65699.15e-47(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.15e-27WRKY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]